NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209579_10000008

Scaffold Ga0209579_10000008


Overview

Basic Information
Taxon OID3300027869 Open in IMG/M
Scaffold IDGa0209579_10000008 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)708768
Total Scaffold Genes609 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)389 (63.88%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000175Metagenome / Metatranscriptome1756Y
F000623Metagenome / Metatranscriptome979Y
F000677Metagenome / Metatranscriptome940Y
F000688Metagenome / Metatranscriptome937Y
F001021Metagenome / Metatranscriptome804Y
F001117Metagenome / Metatranscriptome773Y
F001371Metagenome / Metatranscriptome712Y
F003071Metagenome / Metatranscriptome509Y
F009983Metagenome / Metatranscriptome310Y
F010699Metagenome / Metatranscriptome300Y
F017173Metagenome / Metatranscriptome242Y
F033454Metagenome / Metatranscriptome177Y
F034119Metagenome / Metatranscriptome175Y
F102680Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209579_10000008103F000175N/AMDEGRKRVILIAAAILAARKLAQFEGGGHVPATIYAISDAIIRAEQILKEIDKRWPTPK
Ga0209579_1000000811F010699GGAGGMGRPTFVLKSSVAPKNQIMTEASMQSMASGQSWFSRRMQSRNMKPSIILAITLALRLVALAGGNTKLLTVDPLTNLPLYPATDSRLHLGNEPTRLPESNVCGSKMQADFYSVYDSKVDATLAWYGAHLPGFKKTHAYVANRSQDTFYNSETTLAISVTGSSGKSDENTETYSVVYARFQPGLPENAIIGLNQQKVICQ
Ga0209579_10000008126F009983AGGAMKISQICAVVMLLVVGSVLAFADGIHDPKIVIHGVNGGNGPLETCPPAGCTDVGFNFNFSVPKFGTGQVFFTNDSGKNWTSLTLVENGVPAADISCVQTEFLNCSTKTLQNGSVEIILSGVRGGTNPRNGILNGQSFVIQFSCVGNSCWPGGTGFSGHASAAPEPGTVALMVTGLGALISRRKQLLSRLRS
Ga0209579_10000008143F000688N/AMAEGGQRARAKLQSISITGGLLQLQHELSTGDFVEIAFHTRSGAICGMAEMLHPTRKYQSACLQPFRFIALGDEDHRKLRMALDSALDRSFLDPVSEQLQTPPGF
Ga0209579_10000008147F001371N/AMLLKRESKIRKATAADVEVGLICADRDGNRIRIDHLDRANQTLSYHFLNDELRVQEGIQERSIEQFVAEGWYIAASGSPL
Ga0209579_10000008171F003071AGGAGMKKLVAICFALALLTAGVASAQDAMQNDSMKAPAKAVPVTGKISADGKTFVSDGDSKTWTIVNPEAVKGHEGHHVTLTAHVYPDKKQVHVMSLEMAK
Ga0209579_10000008198F034119AGGAGMRSFGKLLSSKLLSSKLLGSSLTSTRTFAYAALLGLSMFTIQPTLASAEDAHGKFTLSHEVHWQNVVLRPGEYTFSVKSVGPSEFLVVQGVGTGTDAMMMVNDVDSMKSDSSKLVLVSRDGHSFVSTMALPEYDMTLHFAVPSESASK
Ga0209579_10000008265F001021GGAGMTKAIMVSVISACLSFAAGIAVAERVHDWHDLDAVHAHVMEAIGELDRARAANHYDMKGHGAKAEEHLHAAEHELHEAVETMRAER
Ga0209579_10000008299F102680N/AMVMTLRRGFIVASMLGWMMAGMNILSLAQNQSPQSTPTTQTGGTESARTAPATAITGIADSQISGVAEEDTSASLPVIPQILGGKGFSAAFLSEMQRSNFLRGGLNIGATYDDNPLLLSSGAESNTSETIFPNIKIEEATSRTRWELGYAGGLTINQKLTVQNQGSHNLNFDSEFRLSPHVNLRVAENFSLTTGFFDAGTGTGVPGSGGPNVSLLAPLATQRSSTTTVEANYHFALNDLVGASGSFYDLHFTNVPMGTELTDTQTASGSAFWLHRILRRDWAGVSYRFDRITFSPGDGETRVHSFLVVNTLSLSSHVTISAFVGPQYSENQGLVIGSPLPSSNDWSTAGGAEVGWQDQRTSVSGGYSRTISDGGGVLGTVRLQNVYANFRRQIVPGWAVALNALHGTNQSLTLPTTSSATSVNLTSAGIALERNVGKSFGFRMGYSHDFQEQMFTTPLPTLDAHRNRYFVTLSYQWAKPLGI
Ga0209579_10000008458F033454AGGAGGMRLIKFNSLSYLRRLLAQLKLLFRRKPEPEDPYAYRTAPLRRPPHGKSGAAVAELDEE
Ga0209579_10000008557F001117GAGGMTDNLLHIPSAFYRCAGPNCGVQKGDSDRWWVMWSSFGDYQVPVMYLAPWDEKLAVREGAMHVCGEGCAQKLQSQFMGNVMTNRTRRSS
Ga0209579_10000008569F000623N/AMRTDILPLCDQHFRTMEPALAPYTVDFSIEFFRCTDKFCHRCFGERVGYSTPKRGDAPVLTPNQPTCDRHGRPMFIISLDRQRNHVTYACPEPDCAERVVRT
Ga0209579_1000000861F000677GGAGMKYLLSILLLSAVMQAQNLAVTRFALPDAPVQQQDHFWTLENKAEVGVLAGLITADAITTQRGLSQGLQEGNPIMRPFVTRGPAAQAAGFALGFGAGVGAVYLLHRTHHFKAERIAMRMIVAGESAVVANNIIAIR
Ga0209579_1000000891F017173AGGAGGMASIVIDVPEPKKGSFNHTRPPGKLLQSQTLHLREALLKHLKDIADVLAIDPKTLKTEGAVSTYIQRATAILHTRAPNPSEKTVR
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