NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209397_10007813

Scaffold Ga0209397_10007813


Overview

Basic Information
Taxon OID3300027871 Open in IMG/M
Scaffold IDGa0209397_10007813 Open in IMG/M
Source Dataset NameWetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2707
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location NameOld Woman Creek National Estuarine Research Reserve, Ohio, USA
CoordinatesLat. (o)41.224Long. (o)-82.304Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077460Metagenome / Metatranscriptome117Y
F094847Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209397_100078132F077460GGAMSVVVRPIGLLKAFCRDRLDEQDRIVLPDRDGRTLEAVCQDIGLPAGLVSLFIVNGNIQERSYRLQSGDDVKCVAIIGGG
Ga0209397_100078133F094847GAGMQKNFIVTFSSSDKKAARDGILFPLTAVDSAYATGPIRYVTTKLLEKLGYLGPNAFGGLLISPQVSELFSAALEIFKKGEQTEPGDYPYVGDVESPTGTHTVWISPNSTRGKHTLYLPEE

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