Scaffold Ga0255058

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255058_10031709

Overview

Basic Information
Taxon OID	3300027872 Open in IMG/M
Scaffold ID	Ga0255058_10031709 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	2559
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Canada: Northwest Territories
Coordinates	Lat. (^o)	70.66	Long. (^o)	-123.0	Alt. (m)	Depth (m)	570
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048324	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255058_100317091	F048324	GGAG	MKKHIFTVLMLTLVAACEPQPTAVEDIDFEKLEGMPSECATRAASAAVESFSDDTAWTDLMSVEGIAEAAAAITDATQLELQSCITDIYLMGIEDGRILEREVY

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