NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209814_10012224

Scaffold Ga0209814_10012224


Overview

Basic Information
Taxon OID3300027873 Open in IMG/M
Scaffold IDGa0209814_10012224 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3389
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000517Metagenome / Metatranscriptome1061Y
F011570Metagenome / Metatranscriptome289Y
F083864Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209814_100122242F000517AGGAGGMKMQAALLLAVTLVVFPFAGIAAEKKVTDLKELAGSWQGWVTGEQGQERATMIVQANGNYKASTVRGSTSEGQFYLQDGKLLYRSSRTTGKAQLTEDKGKTTLSVIPDDPNYRTGRGDYERVK
Ga0209814_100122243F011570GGAGGMDVRRGVMVLFWWFMVVSQYPAGTLSATTQGPFGTQAQCEWGRQQVGMTTGLRGGQGVGWGLTPCWSDGR
Ga0209814_100122244F083864AGGAGGMKALKSMALGLALVSVLAGLSACAKRPVVLGSSPAPAPSAAATPAR
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