NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209465_10041525

Scaffold Ga0209465_10041525


Overview

Basic Information
Taxon OID3300027874 Open in IMG/M
Scaffold IDGa0209465_10041525 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2188
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001751Metagenome / Metatranscriptome642Y
F006522Metagenome / Metatranscriptome371Y

Sequences

Protein IDFamilyRBSSequence
Ga0209465_100415252F006522GGAMEKFHGHCLNNKTSVMLGLLVCALGISVSSSADARKANRQGTYVGQGYPNLTPSITAMPRNTPKANIVCWTPCGQSGAIVMGADPDPFIRSQILRDASAFFGGTK
Ga0209465_100415254F001751GAGMSSLEMTDENFARLLRGLTIVVGNRRNRILLYQFLAAEIRAFHYSYGIGDDESYNRALTFLENCERYTLRSLVRRSAKHHAEVTVDHAKRVFLRALKKLDTSQGHNLTLRAISVLVETGAIGDK
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