NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209465_10280178

Scaffold Ga0209465_10280178


Overview

Basic Information
Taxon OID3300027874 Open in IMG/M
Scaffold IDGa0209465_10280178 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)835
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035864Metagenome171Y
F066018Metagenome / Metatranscriptome127N
F080414Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209465_102801781F080414GGAGLGSIQRVEMSNRSQAALQLRNGHYSTLHAFFLAAKESECTEFELQLGTSPKGRIEFYISPRGHSEMSAKFDVLGNLVRAVVSEVNIVPVD
Ga0209465_102801782F035864GAGMRRFLSFLMASAILLAGLALAAAEIVRAEGIRPYLLIGAGLMIGAAGVWLVDEFVRMRRR
Ga0209465_102801783F066018N/AVLESKIMAMRGGLKECAKLKGVGFVHVGSFGGQEPNWFARPLPTRISEACRRAFVTALAKVRKEFDLLSPRNTSYEPSSPPD
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