Scaffold Ga0209283_10000746

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209283_10000746

Scaffold Ga0209283_10000746

Overview

Basic Information
Taxon OID	3300027875 Open in IMG/M
Scaffold ID	Ga0209283_10000746 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16660
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021954	Metagenome / Metatranscriptome	216	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209283_1000074620	F021954	GGAGG	MESRGSEWAYANNGRIAAEFLGLAILLLGIGLIVVVSFGADAVNAGVALLAIATFLLVFSVLVFLPRLARRGSLSFSVYSRRSIGDAEKAVREVIEEAGRTPRVVEVKSRSDHPPRIVTAEGILARFRIEVTRHPATAEGGPAWTEIVESFRARDAAEARALRDKITQRLAGGPRPGA

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