NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209283_10294805

Scaffold Ga0209283_10294805


Overview

Basic Information
Taxon OID3300027875 Open in IMG/M
Scaffold IDGa0209283_10294805 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F047595Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209283_102948051F047595AGGMDFDIGSNHYRNASNSIEIDGLGQFSFEYNRRYHEMTLRGFVYDQRGNLVGKIAESSLAINIQGEFEIRPEPSVVKLLHRESEQVLLEVKFLGKNHVQIHKAKLYSIKGRPFEVTPKHWKLGDDPPHSGEDVDCNGNAAS
Ga0209283_102948052F022846GAGGMPQASPEEVGRELSDLAFGIVEQNWLEQHIGKTVDLKSLDQLRLNVAEWEFTYLILFAITNGCGTFSAVDSARTTAILKAFHSTVLSHIAEQAGQDVADEHKKNLPARYRLYGQTLEDEDTNKPYKTPYRLLGEAAALQILGQAFTDPHDADNFRETIKVIFTEVREATMKIMSFQQAQAIEGKA
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