NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209283_10308870

Scaffold Ga0209283_10308870


Overview

Basic Information
Taxon OID3300027875 Open in IMG/M
Scaffold IDGa0209283_10308870 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1042
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032602Metagenome179Y
F084585Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209283_103088701F084585AGGAGGMSSKPVPQGSLVLLWAGENPALHAALLEELQAADIPFSDKSLGDDEVAPTADPLPIDWKPRFGFEVAV
Ga0209283_103088702F032602N/AHAEDSDDPFCSFWRGDDPHIHAELCELLNEEGILHKTIRREDHLFNLNSKSGFQIGIPYSQFEKAEAAIKDAYGTEEEQKDAALLLPYGEGYSPGVRGVFPWRPAPKDFARADTGQGDEPESMAGPIPEENDVDGQSENGRPDWDPTNWNPREATRGVWSNEQSYPGEMIEMALRENQVHARFEKAEGRNAIFVLPEDEIRAREIVKEIVEGAPPESVGLTNRAACGGRRENADECGEVV
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