NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209169_10113621

Scaffold Ga0209169_10113621


Overview

Basic Information
Taxon OID3300027879 Open in IMG/M
Scaffold IDGa0209169_10113621 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1403
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F044385Metagenome154Y
F098478Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209169_101136211F098478GGAGGMSKAKNGKAVDAKKAAAGDKPESISNGKSEKAKDVKIQTFTPANTKLVKRGFVKMFVDFVVKRGSVTTEDLAAEFAGRQVEGKKITKQRVLRYAHWCVNKGVLKAK
Ga0209169_101136212F044385GGAGGMLIRNNDGEGAGEMNVSIMQDGTVIRTNTMYQNGRPVTQNISVRDSQGSVRTTNIIGGKILP
Ga0209169_101136213F006757N/AMRNFAVLPPIKGKAQMALLNLIAFREISTPDLIAMAQATPGGTKVQIPDRLTAIVLILGTRPVDTD
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