NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209590_10039628

Scaffold Ga0209590_10039628


Overview

Basic Information
Taxon OID3300027882 Open in IMG/M
Scaffold IDGa0209590_10039628 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2557
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F016512Metagenome246Y
F018335Metagenome235Y
F083989Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209590_100396281F083989AGGVTVNPVAGLVTGVRVTVPAKLKVLVRLTDIAEPVAPELKFTGVPTLIVKLPT
Ga0209590_100396282F083989AGCAGGVTGVRATVPAKLNVLVKLTDIADPVAPELKLTGEPTLIVKSPTWTVALAE
Ga0209590_100396283F001925N/AVHDAATVAFAVIVTGAGQVTVNPVAGLVTGVRATVPAKLKVLVRLTEIAEPVAPELKLTGVPTLIVKSPT
Ga0209590_100396284F001925N/AVQDAATVAFAVILTGAGQVTVNPVTGLMTGVRVTVPAKLKVLVRETEIAEPVAPELKLIGVPAEMVKSPTWTVELAE
Ga0209590_100396285F016512GAGVPGEPVPVIVTVKLPAVDEVQDNDDVPVPLAVSDTGVTVNALQVKPAGRGVSERETVPTKLNVLVRVIVELIDEPAVPLGEVAVIEKSPT
Ga0209590_100396286F018335N/AVTVTRYVPGVEEDGAQVPVTALGPVTVRLAGQLAARPVAGETTVLRVTVPVNVPIGVMVIVELPVAPVLKSAGEDAEMEKSDALKVKMALAE
Ga0209590_100396287F001925N/AVHEAATVAFAVIVTGAGQVTVNPVAGLMTGVRATVPAKLNVLVRETEITEPVAPELKFTGLPTEIVKSPTWETKLAL
Ga0209590_100396288F001925N/AVQDAATVAFAVMLTGAGQVTVNPVAGLVTGVRETVPAKLNVLVRLTDIAEPVAPELKFTGLPTLIVKLPTWTVELAE
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