NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209635_10000032

Scaffold Ga0209635_10000032


Overview

Basic Information
Taxon OID3300027888 Open in IMG/M
Scaffold IDGa0209635_10000032 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72050
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (82.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007209Metagenome355Y
F047486Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209635_1000003229F047486AGGAMQSETGEYMVTRIEAYDIQERQPRSFELYEEYSQRPIAEVIRTRRESFDKADLNAKRELLTEVEREVKNFCTWLEDTKDLETTTAHYYSASLKSLLLGLPVGVQVARLFGTILDTQDRK
Ga0209635_100000323F007209AGGAGGMLRFKYSLTNEGSRRCRNDEFYLQETPRYKGYTEKIFRTLHRSRKPLTIREISELTGIHKRSVNGVITFNIMAGYIRRILI
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