NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209635_10001618

Scaffold Ga0209635_10001618


Overview

Basic Information
Taxon OID3300027888 Open in IMG/M
Scaffold IDGa0209635_10001618 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16842
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (59.26%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102446Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209635_100016187F102446N/AMRKNYVAQGLIQKLSETANRRLNLKETLVLGVVLKGLPVAYSLARMNSVVENFVPMVAHRPLYMKHHVESYFPSLEWTAYFRDRLNHCESLLIVDDVVNTGFTKQKLESIVYSLTKETETHRQFAALILNRKNLASRNFIGSNDVFALRVDATEVECDWGLITVPLRDLPVKEALLRCEEYFQKFWLNEKRFINIAY
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