NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209635_10041549

Scaffold Ga0209635_10041549


Overview

Basic Information
Taxon OID3300027888 Open in IMG/M
Scaffold IDGa0209635_10041549 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3744
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006410Metagenome374Y
F012730Metagenome278Y
F106037Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209635_100415492F106037N/AVALAVKESENMSKVSLRECYFIKTSGANIDYLIDRVRAAIEEVGVPPKYHINVYKNVYACCGVSGTGLILEVTGPSEKKIKHIDLKAVSKILELCEKEKIEHHHFEPLEIG
Ga0209635_100415494F006410AGAAGGLAEKPKIPPERAKEIQERARERSLIIKELKSQGPQTLDELSKVTGMEKEKVFKHMIAMRQFGKVAIAGERDNQLVYGLPEGE
Ga0209635_100415496F012730N/AMFLRKALGAVDFEEMKGKTFTEIRVTEKLCEVCDKPIRAEERIVKTIEISDYDIYSNLLTRQRAHDRVEVDLEENKIYLYHHDYPGEVHPGCIEKL
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