NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209380_10001686

Scaffold Ga0209380_10001686


Overview

Basic Information
Taxon OID3300027889 Open in IMG/M
Scaffold IDGa0209380_10001686 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14595
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026629Metagenome197Y
F043510Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209380_1000168612F026629N/AMKVLLVHPEDDPEKGPWASLPWDRIVDLGLGGMNTYARWSRHFECPVTTLGSLRNGFADFRRVRDLLGLGCGRLIDQHGLDWWEIMSILLASEMEALVLLQRFAQTIGSGDEVHVSRPGLHASLLKCLLQERTCIFPLRRGGQKRGLSHYLRVSRKLSATQMVDVFWDKYDAGYQLRGRMTRKRSLSAQPAVLLPTAYVNVSRTGIAYANTFPEENFLLVTTRQSGWVRDPPKNVTAAWLSSYASLRDRRHENADLEGRWRSLLTELGGVTEFEILNRLGYMDSFPSRFRHGFEVRDAWRNVLDTEPVQAVLCADDSNPYTRIPLLLAAERGLPNIGCHHGALDSRYLFKRSYADVIWAKGKMEKDYLVRGCGVPQERVEIGAPTFPLSWRGSERPVRETFRSDILFISEAYDISDGRPEAIYRDILPPLADLAAATGRRLVVKLHPAESERERAGTLVRVLSAEQKAITRIVSGPLTEDLLARVWFGITVLSTVAMECAIRGIPCFLCKWLEFWPYGYVEQFIRFGVGIGLNEPGEIGKIPQYLQQHPVGSEVKESCWHPAAPGRLRDLLTGSRRAYTTAVR
Ga0209380_100016864F043510GAGGMNETREIRLPVDLCAAAEKKFAGAFQSVDELVAFVLQELIRGDTVDLDRADQAAVEQRLRDLGYM
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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