Scaffold Ga0209636

Basic Information
Taxon OID	3300027893 Open in IMG/M
Scaffold ID	Ga0209636_10007973 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027893 Open in IMG/M

Scaffold ID

Ga0209636_10007973 Open in IMG/M

Source Dataset Name

Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10786
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10786

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (46.15%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.6478111	Long. (^o)	-77.1112083	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

White Oak River estuary, North Carolina, USA

Coordinates

Lat. (^o)

34.6478111

Long. (^o)

-77.1112083

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030967	Metagenome	183	Y
F079544	Metagenome	115	Y
F102444	Metagenome / Metatranscriptome	101	Y
F104375	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209636_1000797311	F102444	AGGA	VKIRHKGRRALSPIFASLIILAIVTVLFIPVFIWSTGLTAETGSFWELSGLIATERIVIEEVNLRGGAIDCTIYVRNIGKTAIIANNVIISPPDGTIYTYVDPQFSPDFNSVVQGDLMTVDIPDLGFTPISNYTYTVKVYTERGVGDTYQVVA
Ga0209636_1000797312	F079544	N/A	MSGLKLDEGMTKITHVNISNTGTITVKIRAIYVDNLTMTTLICDPSAYWETFIEPAESLQIPVPDGSGSGITFEPINSKIMAATERGVKTGVHEGLFVFGPTNPEYEPSRFYLGPLMLQFNAFWYNETTSDGVLDPNGTWRPGWKMSHHFGYCAWNVSVMNVDDRNITINRYSSFNVVPVDSPSNELSWYLEPTDQTNYTQFIPSNQTVDIIFIWSDPKLFPEEGGNSATKMVLPECRCMVFLTFYGWFHEHDGTTTSYAQTIPFEAAICIE
Ga0209636_100079736	F030967	GAGG	MSGKMPHRLEELEKRLEKLEKHRFEDTLTLIEILSNMTFFGGLKMKECQYAKEGQCSFFTLKSNAKGKIPIATECRINDCHFEPSHYHIELSNVTCTLCSIYKPKTHI
Ga0209636_100079737	F104375	GAGG	LKCPECRGNLVFLKRLKGEIICEKCGLVISPAQTRQGFVEWTPEWFSNWSEKDSDTLREWLTTLRTVSCQLNLPNFPYREEAARIIRQESDILFRSQRFGKNKREAVAALIHLTLRKYNKMRPLKEICQTLSLDHRLVAKYTWNIRKMGNYHRTFSAKDYLRRNGSNLTSDPTLIQTAERLLTRIGKKINGNPVSLAAGALYFVCKRKGIKISKDEIGKVFYISGRTVYSNESKIRKLMYSESIAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209636_10007973

Overview

Ecosystem & Geography

Associated Families

Sequences