NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209636_10013472

Scaffold Ga0209636_10013472


Overview

Basic Information
Taxon OID3300027893 Open in IMG/M
Scaffold IDGa0209636_10013472 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8322
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.6478111Long. (o)-77.1112083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091251Metagenome107Y
F093179Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209636_100134723F091251N/AMRVLEDFGTFIVIILLAYVVYRIATLLEVITSKIKGEKTRI
Ga0209636_100134724F093179GGAGMKKVLLYVATAILLGTVTMVVPLGLLKPSYYNLITFGGRAKVAPGSLAFYETLNGGEETFKQGALKTAVSPSNLRSTGLMLIPSFLLALCVSLYLKKRIF

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