NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209624_10001101

Scaffold Ga0209624_10001101


Overview

Basic Information
Taxon OID3300027895 Open in IMG/M
Scaffold IDGa0209624_10001101 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22259
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F000540Metagenome / Metatranscriptome1043Y
F010024Metagenome / Metatranscriptome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0209624_1000110110F000065GGAGMNKTHIDKPTPKLRKAPQPPLSYRGATPDSDRAKRPPLAEPSGVGEELSPGDRVEGLGNFGIPTGELGTVEQTNEEDAVVKWDDDGRKRLHQPWLKKV
Ga0209624_1000110115F010024GAGGMTNKSDSSFAVVRFNEQTYQPGGVVAVIKGIKVAQRTLDDFDWSQSEEQRRAGWRYFLEETDLRPGTDPEKATTLRQVRLDLQEA
Ga0209624_100011013F000540GGAVAKTKTANLLPKLTETEQDLLSHIQNGYQLETDSLGSNPVLRRLKDNEEIRPLSANRNTIKALEQRGLIGPGKGREPLTIGWRLKSKIS
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