Scaffold Ga0209624_10005325

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209624_10005325

Scaffold Ga0209624_10005325

Overview

Basic Information
Taxon OID	3300027895 Open in IMG/M
Scaffold ID	Ga0209624_10005325 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8653
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047241	Metagenome / Metatranscriptome	150	Y
F056957	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_100053251	F056957	AGTAGG	MASDGKTVTLPAISLVKASQAPTSVVDHPSGKVLPQPGKPAARTAATHVRAQVALLNKYLNDSGKPDQFRVDPSSDDKLIQQINPATGAVIGEFPTSEFAALARSVGISGVVVDQHA
Ga0209624_100053254	F047241	GAG	MKDGKINSGLARALALSQEMLAAADQANLQSLQLLDAERLDLLKSFRLETKQVNAADRALLQQISETNDRTIGLLEHQRRGKGRDLDMAVVGRRAVAAYSSIRLQR

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