NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209624_10006456

Scaffold Ga0209624_10006456


Overview

Basic Information
Taxon OID3300027895 Open in IMG/M
Scaffold IDGa0209624_10006456 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7765
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005459Metagenome / Metatranscriptome400Y
F006799Metagenome / Metatranscriptome364Y

Sequences

Protein IDFamilyRBSSequence
Ga0209624_100064561F005459GGAMQNDFAGSLKVHGQPLRSGEFQFTLSVTENGNREKAVQKGFVLRVLSALTLNWKTPPRVDGNRIEGSVEVSNTSSDDMDLTFVAMAVASNGRATAIGYQHFVLQRGTIAMELPFGETLPYGGYVIHVDAVAEVAPKNLIYRQQLQTPSALQVTVGQ
Ga0209624_100064563F006799AGGAGMQLALQNAETISRLVDQGEFLLKSFHNEHQKDPDGVETEFARGELIGWRSTLHTLYRDCAEDIVNRVTSRTHLIIPSGEVPIGAVE
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