Basic Information | |
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Taxon OID | 3300027896 Open in IMG/M |
Scaffold ID | Ga0209777_10000846 Open in IMG/M |
Source Dataset Name | Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 47473 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (84.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | University of Notre Dame, Indiana, USA | |||||||
Coordinates | Lat. (o) | 41.7 | Long. (o) | -86.23 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022368 | Metagenome / Metatranscriptome | 214 | Y |
F035209 | Metagenome / Metatranscriptome | 172 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209777_1000084616 | F035209 | GGGGG | MFARAVVIKVQPGCEVELTRTFEQEVIPRFRKEEDFRGLLAFTVPDGTEALSLSFWDQKETSRGFFTRSLGGLAALARVALGKLSIQVCEVGNSPLPTLGSVTDHGEYTETTADLQIYRLALQPFQVAPARPPRAEVFR |
Ga0209777_1000084639 | F022368 | GAG | MTPDYDLSKLPTSQADLWICLEVDAILGQILADQAERLGFRLALGDCTVAALTEKPQARLNRA |
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