Scaffold Ga0209067

Basic Information
Taxon OID	3300027898 Open in IMG/M
Scaffold ID	Ga0209067_10014771 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209067_10014771 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4056
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4056

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	Pennsylvania, USA
Coordinates	Lat. (^o)	41.1289	Long. (^o)	-78.4195	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pennsylvania, USA

Coordinates

Lat. (^o)

41.1289

Long. (^o)

-78.4195

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y
F029198	Metagenome	189	Y
F036885	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209067_1001477110	F036885	GGGGG	MADKKDRERVIAEITLSHLMRLGNEQGYPVSREQALAFLNQEGRAFEMWKYMMQAAEEFIAGSLFQHSFVSGGHNGFASRPRPMRSVGNAPL
Ga0209067_100147712	F004823	AGGAG	MYATKAVNGVPAIQRDGQSVLNVCDQSWEFANWLCALLNELGRKSELLLNERDREWANANDRAFRRTAHHA
Ga0209067_100147715	F029198	GAGG	MDSEPNSGAVRVHGEVIVLHCWACGTAHCVNLELCGPEELAHMVCSNSHCRMSMFLINELVLDDKARKQMTNNELTPRATYSRFWK
Ga0209067_100147717	F006278	GAGG	MCRAEIQWLASGPTLKFEGRLVADWAEQARSLVTKNVLPKGLIVDLTEVSYIDSAGEQLLKWLASAGAVFIAGSVYAFTVCDRLRLPPMQEITERSKRRHGSSGEKSSIKYSHPVEAI
Ga0209067_100147718	F001596	AGGAG	MSWFHSSMAPVDARNHASPAEVVACFQDQTNLLGRLAFLITSDHAKATLAVAQACEVTLQGNRPFRDWLFEWAKAATIARAISHGTEAIRICEPTYKDQRCLHVEHLSQGDTEERAASLDLILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRTAVLAANCHALTWLQKRQEKPAEENLILARIS
Ga0209067_100147719	F010114	GAGG	MIIELNDDDTRLLRTVLLEQVQEHLSYTDTSEVAERLYRLATRFESRGREVANITTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209067_10014771

Overview

Ecosystem & Geography

Associated Families

Sequences