Scaffold Ga0209668_10000084

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209668_10000084

Scaffold Ga0209668_10000084

Overview

Basic Information
Taxon OID	3300027899 Open in IMG/M
Scaffold ID	Ga0209668_10000084 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	37104
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (24.68%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028939	Metagenome / Metatranscriptome	190	Y
F046638	Metagenome / Metatranscriptome	151	Y
F093912	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_1000008415	F028939	N/A	MKTNKLKNKNYKLFRYNILKLQIYSNQSHKPLTNFSNSMLEQIEAFLKQMLKVIFEYHVCQSKILFIGFPVISKTRQMKLMHFTNHNFISDKS
Ga0209668_1000008430	F046638	N/A	MITALKNSMLKNVLVLTHGPIILLTNNYNNTKLTFKELDNINPLINLLGFGLNNKIYSKKQIKNLKKMSYRENVSLLYKSMRTVIKIPYYKFKLKEKSSTSK
Ga0209668_1000008433	F093912	N/A	MFKLQKTQKTRQPKAIITILRALLLKSKAFKTKPAALHFNNLFFNHQSYIFKRLKRKVFAKLITSYLYRPHNGCRLRKKRRIKIRTRTKKL

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