Scaffold Ga0209668

Basic Information
Taxon OID	3300027899 Open in IMG/M
Scaffold ID	Ga0209668_10000264 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209668_10000264 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21356
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (28.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

21356

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (28.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024717	Metagenome	204	Y
F025680	Metagenome	200	N
F034061	Metagenome	175	N
F057894	Metagenome	135	N
F065768	Metagenome	127	N
F070850	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_1000026410	F025680	N/A	MKFITELKGRVRSLWGSKKTTHNLVEVFIHEGHTFYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILTEMEKALGAGLTNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWIIRDDENPDIVNSDIHNYKLELFEQLSKGGAKDFFSGLGIDPLMPLLSMSPEDFQILWEYNLVQQRNLKESLFRLSSHRDSGRKKQATT
Ga0209668_1000026415	F005050	N/A	MACVSYCDTSLLEHDLVICNEYKLGGVSAIIVGACGTELVDPSDSVEVDALLTSGEARLISDIRFALPAGSPITVDSPIGCGTSIRINEDRTATLYDANVTDGNNTFWNDVNNRRISWILAYMCDSGKVIYVTAPVGITTSANFILPEQNNELQRYEVTFSWRNKNIPAQYDAPAGVFS
Ga0209668_1000026416	F070850	GGAG	MTEELTSNNQSITPTTGVVLLAFGKVQYYWAAYNLAFSIKKHSPNVRITVLFDDVLKAISQCPEIVKYVEHFGDINQADIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAIALKDIQPMIDELTQSGKDYISHCVGYHTIDKGRDFKEMQWAWADRMWAHFNLLPSYVMPAINSSMQWIVKGSQTEAIYRTAKDLYFNNPIAIKDLRMKWGGGQPDELYMNVALAIHGINPALKAYTKNSGSEGGMIHFAMQRGLSYQEIINNYYLQSYYGGAGFTPRFYIDWLDRMLNADFKSIGSRHIYLISRIAENKYADGKR
Ga0209668_1000026419	F008936	N/A	MASFDELVARKVKLLETVPESIVTAAEKAQRDAWRKLGPLLAEMDVDATGNIRQTEDNIRRIGLITEELNKVLAGGEYKDAVQSFLSSIDEGVQLTDEIAKKIDSNFQPDNVQKQLLAISKQNAINAFFGSGLRDNVTVPFLEQLTANVAARAPLNQAVKALQGVIEGTETTDGRLLANVRTTANTAQAIADRSYSAAVNEELGIEYFQYLGGEIPTTRPFCEHREGAIFHRKEIEAWGNGENSAGINDISNGTWAGRIDGTDSRSIFTFVGGWNCRHFLVPVIKQKVPASVQARAKSEGYA
Ga0209668_100002642	F057894	N/A	MAANRWRSGYMRIQDDTFTGYLTPIGSVQDVEVTFKVKAMQQIMEASESIQMEVPNEYLIGSLKQNDDGYYTADVIIYNKVVRLKLTEDEIKRSKTLSL
Ga0209668_1000026423	F034061	N/A	MCYDSLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLSPMMKADTVVESKRIGQVVTNAANVDLAVGAGKYTGIRVTIDPNTSSFLNFYLSNFKIDIYTMAVPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKMDLAFVYESLYDTTKMIPKKGSCTDCGGHLRAVHVCPFVDAIGIELTVSGTDVISSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLSVSPNQRVNTTVSINIGSKPFATADANDGMIAGRDIAATRYSEELTAMLQNMRLPDDSTCFDCRRNMKYVTALP
Ga0209668_1000026424	F024717	N/A	MATPKEISGRIDALFSEWSGGFTPLSAAVLDMRREMFIRIFGTGTSGGTNTAGQKLPTKPYTPAYAAIKAKNGRPPLELTGFLKRSFATDQGSVFSQGFGVAIYIQADEAGKAEGLQKLYGPIFQPTKEEQTAMLQLHADLLVEQISNQISKP
Ga0209668_100002647	F065768	GAG	MSVCSPCYDAGSYVNACLTEFSFGIVEAETEFTVWLQHNATQKIMQFTATSDVDGYITIEGIQLDPLQGYTIWVTIDGVQQDITVDGDIYKCLSFSAASIGLSPVVIP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209668_10000264

Overview

Ecosystem & Geography

Associated Families

Sequences