NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209668_10011575

Scaffold Ga0209668_10011575


Overview

Basic Information
Taxon OID3300027899 Open in IMG/M
Scaffold IDGa0209668_10011575 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4162
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072329Metagenome / Metatranscriptome121Y
F074566Metagenome119N
F105187Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209668_100115752F072329N/AMVNIRKGDYALIDMYKEMDCDYVQRLETPNKNMILWVDEEGSIPTLKRTPKTNVRGSILAGQQLFGNVILAGQDSLYGVDGIRFADIEGLLKRLEDTAQKVIAEHPILNQ
Ga0209668_100115754F105187GAGGMSYKMTIHMKNAKESRFEKTFQRRAERMLALVMRTLVKVDFGDKDVGIFIENCSIVNIPVGFLKFDDKRWTGKEIAQFCKYIDLSSEFEVNVTFLDPEPVTIPT
Ga0209668_100115759F074566AGGAGMADRDHCMEVVKAYDKVTIVMDCIMEHWLEGNCNPPKELIDQYFETKDAALQALYNDFENIRSNQIFAERTRGMNREFYKKIDKQFGVTEITPELFPED
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