Scaffold Ga0209668

Basic Information
Taxon OID	3300027899 Open in IMG/M
Scaffold ID	Ga0209668_10031306 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209668_10031306 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2730
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2730

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F041183	Metagenome / Metatranscriptome	160	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_100313061	F058146	AGG	MKLSQLTAKPTLIEMILDDADIIKEFGEPITFHTWDRQPLDTFMKLAAADHSNAGSVLEIVKTLILDEKGKEILKDEQMLPTHVLMKAIAKVTELLGK
Ga0209668_100313062	F003807	AGGA	MNNDNIWYKTNEEKIRSLIADEAKTIPMLNNMEATIKQLKAKQTFRLALLNQLLEDSYKK
Ga0209668_100313064	F058142	AGGAG	MAEITYSVLNEPYVTQTEIYNVLKRDILPRWNIPIYTDFPSEVDVVRYGVYISDVHLDERNPHQLGIQYCGSIYHAYDTFSVTYVSYQDDPYNNAVNAIIGNLVTALKDNGEQLMDGYFERDFNQVRTYGPTQAEKHTWTFRLLRMEFNT
Ga0209668_100313065	F002260	AGGA	MSVPYQRISNATVADINFYDPAAERRAEALNVNWEPYFKVASQEWLYKMEFGWWQNYCDTVIGAYYYNNLPNGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDKQNYEFAKMRCDDEWRKAQELSNWYDLFQDSPNGPTTKLEENWTADPNYFNGDRRYF
Ga0209668_100313066	F041183	N/A	NFKATPSNTYYATSADGFDRVSALGAMELAESGSNVSVGAGGTEGFSAASVLDLVRLVKQNFKVARMPGTPVIVLDSNGAAEGSVAGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLQTGRIESVYGCMIIFTTFLQSASRTFLGSGPFSVLVGAYFGDSAIFTVMKEGLQLKTGETPGGLQMWLTGVGYFGSGVGDGRRGGAINIQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209668_10031306

Overview

Ecosystem & Geography

Associated Families

Sequences