Scaffold Ga0209668_10032512

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209668_10032512

Scaffold Ga0209668_10032512

Overview

Basic Information
Taxon OID	3300027899 Open in IMG/M
Scaffold ID	Ga0209668_10032512 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2689
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_1003251210	F001964	GGAGG	MSRNLFAPPIFKVQISGAIGWSDLKQRVVSFRTVEYSTRKEAEAAAKELNPGEYTQGRIRVVPVEMPEDYDVYPVTERTSV
Ga0209668_100325123	F103133	N/A	MRYKIQLSTSTGGWSDLRESANDGQTYETCLFPTRMAAVAAREEFSELSEFLETTRIVTAETPETENIYA
Ga0209668_100325127	F002227	N/A	MKLTIQSKQNAQTIIDLFNAIITGEIQEHQATPLSIYDEEKHICSIVAANGEQILELIIEREEGDKIYPSESCGINGDGEETK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.