NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209668_10032512

Scaffold Ga0209668_10032512


Overview

Basic Information
Taxon OID3300027899 Open in IMG/M
Scaffold IDGa0209668_10032512 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2689
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F002227Metagenome580Y
F103133Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209668_1003251210F001964GGAGGMSRNLFAPPIFKVQISGAIGWSDLKQRVVSFRTVEYSTRKEAEAAAKELNPGEYTQGRIRVVPVEMPEDYDVYPVTERTSV
Ga0209668_100325123F103133N/AMRYKIQLSTSTGGWSDLRESANDGQTYETCLFPTRMAAVAAREEFSELSEFLETTRIVTAETPETENIYA
Ga0209668_100325127F002227N/AMKLTIQSKQNAQTIIDLFNAIITGEIQEHQATPLSIYDEEKHICSIVAANGEQILELIIEREEGDKIYPSESCGINGDGEETK

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