Basic Information | |
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Taxon OID | 3300027899 Open in IMG/M |
Scaffold ID | Ga0209668_10032512 Open in IMG/M |
Source Dataset Name | Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2689 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | University of Notre Dame, Indiana, USA | |||||||
Coordinates | Lat. (o) | 41.7 | Long. (o) | -86.23 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001964 | Metagenome | 610 | Y |
F002227 | Metagenome | 580 | Y |
F103133 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209668_1003251210 | F001964 | GGAGG | MSRNLFAPPIFKVQISGAIGWSDLKQRVVSFRTVEYSTRKEAEAAAKELNPGEYTQGRIRVVPVEMPEDYDVYPVTERTSV |
Ga0209668_100325123 | F103133 | N/A | MRYKIQLSTSTGGWSDLRESANDGQTYETCLFPTRMAAVAAREEFSELSEFLETTRIVTAETPETENIYA |
Ga0209668_100325127 | F002227 | N/A | MKLTIQSKQNAQTIIDLFNAIITGEIQEHQATPLSIYDEEKHICSIVAANGEQILELIIEREEGDKIYPSESCGINGDGEETK |
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