Scaffold Ga0209668_10080348

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209668_10080348

Scaffold Ga0209668_10080348

Overview

Basic Information
Taxon OID	3300027899 Open in IMG/M
Scaffold ID	Ga0209668_10080348 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1847
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044971	Metagenome	153	Y
F088503	Metagenome	109	Y
F102805	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_100803483	F102805	GGA	MIEQDPSQTLADALARAATAEAEVARLNRGIALEIAAADRRTARKIDILKILFSGIAALMCFLGVLTFVNWFIPGTIDRDGIGASYFQMSKDILLVLTGILGSAMASVFDGRSGGSRSTDRSEQQELPPA
Ga0209668_100803484	F044971	AGAAG	MATNPTGSVESMAAKAVVSLPTMWRIITVIGSIASTIILSVGLFAINLVRSEWTELRAEVKEMRSRLEEMPDAATLNRLADDVQDLSRRVGRLENQVNHWDE
Ga0209668_100803485	F088503	AGGAG	MVKFTNSKGKLNASLASSAVLGAAIPIIVTAATGGMAAVPIAMWVGLGSVVSGLLAGNVEVKTKVERALDADAKKSADTNGD

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