NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209668_10100317

Scaffold Ga0209668_10100317


Overview

Basic Information
Taxon OID3300027899 Open in IMG/M
Scaffold IDGa0209668_10100317 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1681
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089755Metagenome108Y
F096499Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209668_101003171F096499N/ASKQRVIRIVSNKDVLLHSELIEFSDNILSISQEIPDEITGYRFMIGPDAGDKVYQAQLDAEKGITDYIRGAVGTFSEIPPYPFTWLGDIYYVVDTNTWWQLSVNPITFLIEWIQFPNGPVLTDKFFYKYGDEKNKFETIFSSLYDRFGIVSCGNLGTDKDKITPRLFWVGTTGGYGYPVELRGLADNGNFSLRYTGSHGMFNLFWKDWVDWIMNIRKSVKIEKQMDFIELKNIDFTKRYRINGINYLVSEISVTLNKSSIKSAQLRCFSCP
Ga0209668_101003172F089755N/AMIDITETPNLISFAGNPVIFEACSSDYLVSLGGRAMFELVVSGIDTTTGHSFTMKFAGKTLVFKSAGITEFDGLLFEVAYYGQTFNDFANNIYQCFLQNYDIQKSFDVTLGPVGTSQRKITLAAKEAGDEYSVTLTNVGVIGVAQGTNTPGTDDVYRDFFSILCLIRDGYNYTIGEDLKPTDIMGGARFDISDYLRSKFAAWELTRFEFPELTGNVRVHGWDYLLKYRVSFAESIAGHVKGLYSTGWKYALAGGLNHELLTCLNENYLEYFAVT
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