NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209668_10150847

Scaffold Ga0209668_10150847


Overview

Basic Information
Taxon OID3300027899 Open in IMG/M
Scaffold IDGa0209668_10150847 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1409
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003459Metagenome485N
F029089Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0209668_101508471F029089N/AGKHGAAPKPANANLLDLNDKLGLVPAYDDLTAATLRADFIKLVQKLPADQQERFMKDLDQMTPARFEKGIQFIQNQLSKK
Ga0209668_101508473F003459N/AMNHLVTIPKSDISKADIADIAAGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYQHDQVWSDLQASMKAREELLKMAFRNAGKATVYDESTGEAVPVCPAKGTKPSIAVTFKTT
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