Scaffold Ga0209253

Basic Information
Taxon OID	3300027900 Open in IMG/M
Scaffold ID	Ga0209253_10008976 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209253_10008976 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8606
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (22.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8606

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (22.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F022872	Metagenome	212	Y
F041161	Metagenome / Metatranscriptome	160	N
F067260	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209253_100089761	F000710	N/A	QGIRSIGFAITAATGITQQTLSLSGLAKSFEGILLTSAFTATPQTVINPKQLRITLTINNDVVIDDDVALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQLRLVNAAASQNVDVTIWYRNEL
Ga0209253_1000897617	F041161	AGGA	MPYKDLVHTLRMLGKQVAESVEFADQFLPYHTTPQEIWAILKDNLVYKNDPPGVELLQSFPSLMNDNYWGTPGAGDCDCFTIAALACAAARGIPARACIVGNSGEAPTHIYCQYLVNGRWIDFDLVSSDYGVTRPYKYKQTLKLH
Ga0209253_100089762	F022872	N/A	MSWQIPTQIEQDIIANKAQYRTFQTGVGGQSILPVPPNAYAVIFGYDFSPAGGGLWISNIVNSTPILTPDTIRWFETQQISFYTGTDFYPFIHHVNIEATGISIAGVGTFQANSVSNKPISRQTYITSDKDITISVGLIIDSVVASANAIPQTNRTPALLTYGGSAQAVATQTDFGPAATPIQFMQPSPKDYQDFAFGLLPNGASGQAFATPDTSRGLYDPSLFLFNTFGAAFRDAAAANYFLCLHYALYTQSVPESRG
Ga0209253_100089764	F067260	GGA	MNHFDRVVNPDLMRCETPEQMLQVLMHHYELDCKIGTITHLAFRQGLKAAVNMVNPKVKTTASAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209253_10008976

Overview

Ecosystem & Geography

Associated Families

Sequences