Scaffold Ga0209253

Basic Information
Taxon OID	3300027900 Open in IMG/M
Scaffold ID	Ga0209253_10078427 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2720
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026004	Metagenome	199	Y
F037731	Metagenome	167	N
F042339	Metagenome	158	Y
F069698	Metagenome	123	N

Family

Category

Number of Sequences

3D Structure?

Metagenome

199

Metagenome

167

Metagenome

158

Metagenome

123

Protein ID	Family	RBS	Sequence
Ga0209253_100784273	F037731	GAG	MANKKEQPPQKSNSLKSLRYKLQLIDGLWSIPLAFLVFALSGTMSVAYFNDAIISTEYIQYIVLAALVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLTTWQKVVLYLLLYAFYFAAYLYILHMLMTVTA
Ga0209253_100784275	F026004	N/A	MEENKLRSTVLIAAVAAVVLIMIIVGVKSCKEKEDPAIERLQSINDSLYQIIETNNSKTDSLFLKIDSLQIHQDTIIQQQQITNEIYRNETYNILSATPANANAQFRATLKKSDSLLKAGFYSRTYNLRSATFQSQLQ
Ga0209253_100784276	F042339	N/A	MEIDSLYQLERLKTTYYAKITGIQAQSYETLAEIYANKQAIEKAIATEKDNEIKELKKKNRRLIITNTALTLGITAVAVSTIYFAIL
Ga0209253_100784277	F069698	N/A	MDFQPRDLITIIGGAVSLTGLYYALKRDVVKVSSALGKVESYHKREVTMLSDSIKDTKDEFNTKLNTMKEEQNKAIDKLEKKIDVIASQNLTISTNLAELAGF

Protein ID

Family

RBS

Sequence

Ga0209253_100784273

GAG

MANKKEQPPQKSNSLKSLRYKLQLIDGLWSIPLAFLVFALSGTMSVAYFNDAIISTEYIQYIVLAALVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLTTWQKVVLYLLLYAFYFAAYLYILHMLMTVTA

Ga0209253_100784275

N/A

MEENKLRSTVLIAAVAAVVLIMIIVGVKSCKEKEDPAIERLQSINDSLYQIIETNNSKTDSLFLKIDSLQIHQDTIIQQQQITNEIYRNETYNILSATPANANAQFRATLKKSDSLLKAGFYSRTYNLRSATFQSQLQ

Ga0209253_100784276

N/A

MEIDSLYQLERLKTTYYAKITGIQAQSYETLAEIYANKQAIEKAIATEKDNEIKELKKKNRRLIITNTALTLGITAVAVSTIYFAIL

Ga0209253_100784277

N/A

MDFQPRDLITIIGGAVSLTGLYYALKRDVVKVSSALGKVESYHKREVTMLSDSIKDTKDEFNTKLNTMKEEQNKAIDKLEKKIDVIASQNLTISTNLAELAGF

NMPFamsDB