Scaffold Ga0209427_10068520

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209427_10068520

Scaffold Ga0209427_10068520

Overview

Basic Information
Taxon OID	3300027901 Open in IMG/M
Scaffold ID	Ga0209427_10068520 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3287
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Levybacteria → Candidatus Levybacteria bacterium RBG_16_35_11	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089866	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209427_100685202	F089866	GAGG	VALLTLVDGRKGQYDIVVLLTAYNEPLSFAEWLFIGKCYLDSEGSYYPVSEGYIGKAMLLNALNELAHGVDFEKVLNRYRLNRKGRKLNIIDKRRNAISKKSLEKLHEVLTDS

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