Scaffold Ga0209048_10540417

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209048_10540417

Scaffold Ga0209048_10540417

Overview

Basic Information
Taxon OID	3300027902 Open in IMG/M
Scaffold ID	Ga0209048_10540417 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	783
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024343	Metagenome / Metatranscriptome	206	Y
F061882	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209048_105404171	F061882	GAGG	MSGRVLSFPQRPLSTEAGGKAAERILATPLDERAPRARTLHLEDPETLLALCGILRERMSTSPASVRDEAEFLYRFIATPKREIGLFDERDYFLGEAALLAGNACRNLSLREEAWLWFDRAEAGFRHTMNAPGELSRLAYQ
Ga0209048_105404172	F024343	N/A	VEKPSSRRPDEVGSVFGRTLDVIHSALVSYYRLTEEEARGAEEDLFIWFQRLSRRGGSGQMPVALLRISLLSAACQYGRSYQLWKLGGEDCADPALNELLSREPDEVASDLDRRFDEDRT

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