NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209488_10009194

Scaffold Ga0209488_10009194


Overview

Basic Information
Taxon OID3300027903 Open in IMG/M
Scaffold IDGa0209488_10009194 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7318
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073923Metagenome / Metatranscriptome120Y
F079244Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209488_100091942F079244AGGAMQISRDAEGLRFIGEWNPENGFVAGDIRCVGCGRRIDPHVDSRDVSLACTGCGTKKDFWAEAEMQVFLAENWSRLRQACTHPTVAIHRSL
Ga0209488_100091943F073923GAGMSTTLEDLSSEIRHFSAEVRRLEQRLKSEPTPDPAALNELRHAVDNMRLTAWSVSELINAERIKKNPDTVMAFLSAERLRRFDQLVRSLCGDIQRGLITVRTDGMLSLCESVNDLQQRLAQAIKQRTQAYKVKDAAG
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