NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10005838

Scaffold Ga0209415_10005838


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10005838 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22024
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001759Metagenome / Metatranscriptome640Y
F002337Metagenome / Metatranscriptome569Y
F003854Metagenome / Metatranscriptome465Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_1000583810F002337GGAGMTLAIILVTAAVAALGIILRLAVTRSLQARGSAGLAATIRPIDIEAFRNLINPAEDDYLRRRLPPAQFRVVRRERLRAMAAYVQVAASNAAVLVRVGEGALASSDPRITGAAQQLVNDALLLRRNTTVALARIYLALAWPNSGFAAVRVVDRYEQLSGTAMLLGRLQNPAVPVRLSARL
Ga0209415_1000583821F003854AGGAGGMLARHHLTRNPYFHFHPLHTLFSLLAAMILFGLMMWILAIPAR
Ga0209415_100058388F001759N/AMTLKSALQDLRETTLSAVSGLLAKLAYLGSLRRREGGYMHWGMSLVHGEESSDRALKAAHTEVLSTVLRTPISELAEDLRQSSRDNEQTPGAYVEGMREQFSALLPSPQDASSARHLNSVLVALSSLEKNREAATPSAS
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