Basic Information | |
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Taxon OID | 3300027905 Open in IMG/M |
Scaffold ID | Ga0209415_10005838 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22024 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (78.26%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001759 | Metagenome / Metatranscriptome | 640 | Y |
F002337 | Metagenome / Metatranscriptome | 569 | Y |
F003854 | Metagenome / Metatranscriptome | 465 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209415_1000583810 | F002337 | GGAG | MTLAIILVTAAVAALGIILRLAVTRSLQARGSAGLAATIRPIDIEAFRNLINPAEDDYLRRRLPPAQFRVVRRERLRAMAAYVQVAASNAAVLVRVGEGALASSDPRITGAAQQLVNDALLLRRNTTVALARIYLALAWPNSGFAAVRVVDRYEQLSGTAMLLGRLQNPAVPVRLSARL |
Ga0209415_1000583821 | F003854 | AGGAGG | MLARHHLTRNPYFHFHPLHTLFSLLAAMILFGLMMWILAIPAR |
Ga0209415_100058388 | F001759 | N/A | MTLKSALQDLRETTLSAVSGLLAKLAYLGSLRRREGGYMHWGMSLVHGEESSDRALKAAHTEVLSTVLRTPISELAEDLRQSSRDNEQTPGAYVEGMREQFSALLPSPQDASSARHLNSVLVALSSLEKNREAATPSAS |
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