NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10023482

Scaffold Ga0209415_10023482


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10023482 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9343
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_1002348210F099605AGGAGMPSTTNSASWDFNPSDPVHLSATFSFDTEDTQDSAPVAAAVAAIQARIAGASVTATQTDPATITVTITI
Ga0209415_1002348211F000703N/AMQVREYQESDLAELRAIHAAQGFAYPLPDLSNPLFVTKLILSEGSPLISADPIASEESDAQSAPTQQKILGAAFLRLTAEAYLLLDPRAGTPRQRWQWLLQLHAAAERDAWQRGLEDVHAWLPPPIAQKFGKRITHLGWRRDDTWTPYCKRLACPPGRPNP
Ga0209415_1002348212F000781N/AMLTVAQLAPIKDRDPYLYETLTKIVASVNASSQAAGVDPATPAPAPTPVASITVQASNGWFDISVTDPSNARPGLFYFAESDTTPAFNSPRVYFMGASRNLYLQLGNQTLYWRAFSQYVGSLPSAPITFGAPPTAVAGGGAAGPAPLPSAGSGVLPNGQVRGGNGFGINPGSRITRQTIL
Ga0209415_100234828F000624AGGAMLIHWSALLTAFVPVAVQFVLFLRWLHRRMRNDEITRAFVRDIATNHLPHIYSALREIAQGQGTELSEPPLVRFVDLHGHTHRHHD
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