NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10259265

Scaffold Ga0209415_10259265


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10259265 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1552
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001305Metagenome / Metatranscriptome727Y
F016841Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_102592652F016841GGAGGMTLSGRDALLVGHSFPTAHVLTDKLCRWGFRCHLASDLRQAFGLLILHPVDLVLSNTHLPDGTGIDLLPALAGRPVTAFLCLPVENSCFWLPAIDGGKECLGLPALRPLEFASAIEKMALLLAPAPKIN
Ga0209415_102592653F001305GGAGGMITEGAKDFSPMYSGWFGKSVVLLVAIRKCKIPLPCRILDESISAVHIRIDTGLEMNLRKELILAVEEYGIASNSRIN
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