NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209404_10004591

Scaffold Ga0209404_10004591


Overview

Basic Information
Taxon OID3300027906 Open in IMG/M
Scaffold IDGa0209404_10004591 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7899
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007004Metagenome / Metatranscriptome360Y
F009987Metagenome / Metatranscriptome310Y
F045800Metagenome / Metatranscriptome152Y
F052862Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0209404_1000459110F052862AGGAVDDKEQSRQSQTQILELNKDIEHLKYILEELEKDKEFLKEHFTLKNAQRLEDVSKIHARMDKHIQTELEYHQAIRDKVSTEHAAIHKRINQAERWIWIFFGGITVISALLGKASLAGVFG
Ga0209404_1000459111F007004AGGMKNVMLGFCLIVLIGCGTSNAYQKSSVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMLKQLEDCREGGR
Ga0209404_1000459112F009987N/AMMNLIGNALGLGLKIMDKIDKNSDKHSFEEFKARKKEMDNSLADADVEGIDSMFEYLAERSRGGSTGRKG
Ga0209404_100045917F045800AGGAGGMLSRTPAEDCLEVKEYLDAMIDYYKDTHNPLLVERRKTYKDIKIALFGEDIDYGNKGNKDTQTWVC
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