NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209404_10016185

Scaffold Ga0209404_10016185


Overview

Basic Information
Taxon OID3300027906 Open in IMG/M
Scaffold IDGa0209404_10016185 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4085
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F004439Metagenome438Y

Sequences

Protein IDFamilyRBSSequence
Ga0209404_100161855F004439GAGMKSLIQHLNERVVRSSLSDMLFQPKITEYNRMMIPISSSMYKRIWPDNIRATVFHTTDSEGVKNISRLQGKKTQISAFFAMQSRYMEIGIATQGGVHAVLEMDADVLLSAKGDVMSYVDKSGRRWVTIADLEETSRYTNFGKVLRDIEKMFSALVPKYLTRGEFQDYSTIFQIWHQAKRKVDSKTMSLIIRDYMDGMEKVIKDNLDTFTSVMRSYAMKRESDYSWDEQVVNNIDVKKMHLFKLPDPADNEPYPEENDDQDELIEYAASKNWPTKIWDAAIELEIYTRDIAKKELGK
Ga0209404_100161856F000245AGGMKTFSRLREGRLDDRMDKAVSDEIKKRKLARFPVNATDDYKMKTKKNFAFKFPTPSGEMMFHVYLRPMAKPAKSHTKAFSYDIEDK
Ga0209404_100161857F002715AGGAMAEELQDVKLEVGLLKNEVEARGKQTEVLLQKLDLTTDKLQQLTVQIIKLNTRQEDHLKHDTTVRDELKILHSRIGDLHDKQLDAHREIEQRLDKLDQYKSKLMGMIVVVGGALGLTVALATHFL
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