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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027906 Open in IMG/M |
| Scaffold ID | Ga0209404_10022058 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3503 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tropical Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 15.249 | Long. (o) | -20.515 | Alt. (m) | Depth (m) | 55 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020371 | Metagenome / Metatranscriptome | 224 | Y |
| F056157 | Metagenome / Metatranscriptome | 138 | N |
| F106115 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209404_100220581 | F106115 | AGTAG | MAVATAASIQAHLIGGTYPEGTLNANNIFDYEQYTTRRRYPSCEVITTQPQSTIETKRSTDTIVGFEINYYDKNLGLRTDDVSTQREVENAIMTRMETMVLQDYKIVFESKTWSRQSVQRDGGHPAYLVSTLKITVKQVNVTEMPVDGVLKFKVSGSSVDNAPSGDYTYTNVFDVDLQSGYRDIEEGYTGSNIPRHFAGHIQGRFICNIMVKNADLGSTGDKLNKMPLLRSNGEKPEIKFVYTNKTADEV |
| Ga0209404_100220582 | F056157 | N/A | MAKKKLASEDYWAQQIIRAQSGGKDYIFALVRRKYSDDDIEPVGPGEYIGMTEKRSYPKITDNDPDSDTFGKRIDKPNSEPTGIKMEYQDEFTPENIKKYQTMSGITDFGETILIYKFKQMSIRADKVNEFWSISQDDAYNKYILKEQVIKIEEDKSNTRRRISKKAG |
| Ga0209404_100220585 | F020371 | N/A | WETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVIGLADGSLTAKAAAGAWDTFTANTDHSDNSPLLDLGVAQLLIEGSGVGGKLSRIGMHPLDFAKYMSNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNSIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAAMIQSETGRQLTGCTTPTNWT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |