Scaffold Ga0209404_10132057

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209404_10132057

Scaffold Ga0209404_10132057

Overview

Basic Information
Taxon OID	3300027906 Open in IMG/M
Scaffold ID	Ga0209404_10132057 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1504
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	15.249	Long. (^o)	-20.515	Alt. (m)		Depth (m)	55
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052867	Metagenome	142	N
F094382	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_101320572	F094382	N/A	MNYKDLIKECKKRGLTISDNNGKFSLIDKEGKKHGLNSQDMKLYKSGKEEVPNYFIEFLDVHK
Ga0209404_101320573	F052867	N/A	MFKYTMSTKDLIASNKDANTKKVFKEAEDTIRKITQLHLNNPKIKVELDYWDWEDEVLGEQDGGDPDGYLYCWVDDETKSDEEIDDIIESKGEAWSDRLAEVFQDKNNKKKVTKEFQKYIDCEGDYSGAGYAIILNGKRAY

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