NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207428_10000001

Scaffold Ga0207428_10000001


Overview

Basic Information
Taxon OID3300027907 Open in IMG/M
Scaffold IDGa0207428_10000001 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1034622
Total Scaffold Genes922 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)571 (61.93%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001605Metagenome / Metatranscriptome664Y
F002324Metagenome571Y
F002548Metagenome / Metatranscriptome549Y
F004033Metagenome / Metatranscriptome456Y
F013826Metagenome / Metatranscriptome268Y
F018610Metagenome234Y
F051251Metagenome / Metatranscriptome144Y
F081525Metagenome114Y
F084700Metagenome / Metatranscriptome112Y
F092677Metagenome107Y
F094358Metagenome106Y
F101835Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0207428_10000001104F084700GAGMSAVHLPMSERVLDKLADILFATDEILDMIRVEERLPDATTVAVENSVQGVYDQINELMKKLAD
Ga0207428_10000001129F101835GAGGMTSGCRYEPDVVRAAEEDRWTDSLRRHLTECDECVAAAAAAPWMSRFSRISDREHILPDPSVVWLKAKLLQGSADVGRAGRPLDVVQMLAYFVVAGGWAGLLTWRWSAVETWMRSFTPAGLVTTAAKQTGSLSMSFFAMVFVLASMTVMLALHTILAEE
Ga0207428_10000001137F002324GGAGGMGEVRLFQICYEGELTVEVSHVMRRLGAEPNFDQSWQVFLPEGRHAAPLVRYLRAQTAADARLLVACTQFTTARDFLLVRHSLTPGADYSELHEALERLGTVVALPFESTFVIQSLYATEMRTDVNTLGLALGELCPDESLMVTGISHDWAYSDSGVSRMFVGDAFEEAVFKTF
Ga0207428_10000001139F013826GGAMAVCWRCPRCKEVSCEDDVNAQGRPLACDHCERPFLPHETECMVCDARNPWARRDSLHFWCRECGNTQTFYGRTA
Ga0207428_10000001339F051251AGGAGGMTEPKNPTVVLIGEPLTPEAVIAQLRTLRSQIEDVAPLSKEQRKLLQQRVRLHTKPVLDASINVIGVLDNVSQALGQPLDEVRQLQDDVLRWDAVVDEARAFLKTIEGSTLNRRQRLTVIATQAYAIGTQLAKDPEKAVLLPHIEEVKRLKGVSRRRKPAPATKPPATAPANDTSTSRKA
Ga0207428_10000001404F094358N/AMLDLDGLQVAYLGVALAHYLDLETGEIIDLPLDAEAPGEDDRFLRIPTRTPESETEDRRLFVEKLPPSAMRDQLESTIDDWNAFRHVLLEDRKTERQFFNFKNDQATRAIEEWLTSEGIEPSS
Ga0207428_10000001431F018610AGGMIEVAVTVAMAGLDPEEHFLYLAPYSDRRDGPETVADYVNGRRRFFPMLAGGVPKMVNRDQVLWVRYEKLPAVVDLEETIVERLTILELVDGARIEGVVPTTDRPRELSRLSDVLNDATEEFLRIDADEDTYFVNKAFIRRVIPR
Ga0207428_10000001457F004033AGGMKNFVVGLVLLMFAVAGFAADRPASPEINPPANGEEWLKLSSTEKLFWSVGYAQGYTEALSKIDVTSGPTSPCASLAVRTERQTSTSGKLSGFELVSGLERFYSEPANTVIPLGSAIRINLLQASGKDAVTIQELIDTARVLGLQAAARPRQ
Ga0207428_10000001641F002548N/AMPKFEYETHTEPDSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVDCARKAILELFPGFDVRYERIVQPSFSRVLQQRWPEEELSYADPHEMVN
Ga0207428_10000001644F092677N/AMLLVVLAGACGGQAPIDHQSEWRDVLRHKQAAVAPDASPDQKQVYADSVRAFVVKHPNHGRAVEVWQRLQLEFADDLAEAGRYQDAIRIYRSVLTHHPENDHARSGLALAAARLAVSREGLLALRKGMSHRQVASLLGKPIPGWSVKNRRAGATFEAWYYRTRTGSLAGVYFRDGKVFAAEETSNERLGRLGS
Ga0207428_1000000166F081525N/AMSIKIRFSASVAACLLVANVASAACVNRFVSRTERPRQVVTLLTGKLTFQEAQALAAAINKKASPPVEWVGDDGKTISKQFGELKVVRPMPVGCDGKTSGVVMIVTFATSVIPTKKMLVKLDAETTVAFDQQAE
Ga0207428_10000001767F001605AGGAGGVYPSPAMSDESPRQALPEAQSLAQLPLKILEEVIRQLRSTRNDIIRFGVWNIRNLTDDEFNKTDDRKLFGYFRQDLLETRFLSKGRRIDLVQLWRWFDDQMSGVEPLLVDKREVFLNIQDKDLDKVRKRIEEIQSFLPALRSDDLDGFRRVKYKLRRTVMRLTYDLHHVFKRLEKHRKNIFMTSGAPHPERERLPLEAVVEIPEPPMVEDHEEVDA
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