Basic Information | |
---|---|
Taxon OID | 3300027907 Open in IMG/M |
Scaffold ID | Ga0207428_10000049 Open in IMG/M |
Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 179267 |
Total Scaffold Genes | 183 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 143 (78.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Tennessee | |||||||
Coordinates | Lat. (o) | 35.8444 | Long. (o) | -83.9599 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008504 | Metagenome / Metatranscriptome | 332 | Y |
F013145 | Metagenome / Metatranscriptome | 274 | Y |
F018955 | Metagenome / Metatranscriptome | 232 | Y |
F057224 | Metagenome | 136 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0207428_10000049115 | F057224 | GGCGG | MVVGALTVFTGAVLFLAAGDVIPLPDTTFGGPRWLVALLALGIFFGGFWAIAVGLPTPRMRGLLGGAAGLAAISFGALLMTWLAVTGGGRLAPARPPRGTLVLGPDVGGILVHAFFWLFAIPLDVIALVGWFFALRALLRRRPP |
Ga0207428_1000004912 | F018955 | GAG | MSASTRNDSGSSGHARAEELRLLAERLRKALQQGGVPQLLRRSANRLASPWLQFGSVTFFRRRLDGGPEAPRARPGLEIFEASLADVSLILEASDPRRTARIVRERLRRGDLCFMALDPHGRPIHSGWATTVGAHVPELERDIVLRSHEAYLYDAFTPPSRRGTGAFGFVLDHLFVKLQALGARVVYSYVRSDDPKGQRAACVRLRPVGTVRHLRVSGRAPLLLGGLHNRLPTLVRQLVDDEGRPLR |
Ga0207428_1000004949 | F013145 | GGAG | MRWTGVVAIAIAALAIPAMVFAQGGQGAWCGGSYGPEGTNFGPCPAAQSGAQVAGQASGIQSQTVATEPQYPANQVTFRDGKAYFNQQELNLNYRAYPDRSGEFQSPGSSD |
Ga0207428_1000004950 | F008504 | AGGAGG | MAALRYASLALVLLLFGCASLDPKPIEVDMPAAQKHFIVRADGDALPR |
⦗Top⦘ |