NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207428_10309738

Scaffold Ga0207428_10309738


Overview

Basic Information
Taxon OID3300027907 Open in IMG/M
Scaffold IDGa0207428_10309738 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1167
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012064Metagenome / Metatranscriptome284Y
F101827Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0207428_103097382F012064AGGAMRLCRTVAIVGLMAALSLPAAASAESGHHVGLHDMTCTSITAMGKGMPRRAALQLTLTNRDTGGTLAGQTVRTSATGEFMVELPARLNQVLSLRLTVSRPDGSKVAFADHVMAKGAPMCSLPFTGPSRSASLLLAGAAALGLGLVLVATATRRDRVLARAAAFQTARVRLPRR
Ga0207428_103097383F101827N/AVARLKADQTYEATAWVRASRPGVEVQVNLYELRGGRRFAVDTVGAVPRAGEWQRLDVSHDTHRPGATLAVEILAPSLTGGTSLLVDDLAVRAIPSMSMR
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