NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209006_10000178

Scaffold Ga0209006_10000178


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10000178 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67468
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (75.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F001265Metagenome / Metatranscriptome735Y
F001399Metagenome / Metatranscriptome705Y
F024875Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_1000017826F000092GAGVKQHLGRQSGVQNVEVSLLDGKVDVTPKEDGQIDPVQLLKATYDSGVTAAEMDMTARGKIVKDASGNLALQVEPNRSFAFAPNELSKRLESLAGTQTLVTVRGQLYKKPAGKKKAGLSAPLKLMILEVQKKE
Ga0209006_1000017844F001265GGAMEELHIRIARVTDDLRTIQRELNCAAMQAPSDPELMEALNSLSETEPIETLRTALDQMRHFLWFYSQVMNNEPELGDKLRQNISGKTTSDEKPKVESSFLDQLSRADEAMLLHHLAEAKRQKPN
Ga0209006_1000017854F024875AGGMNDPRFELLKSAPLDSWVALSEDETRIVAVGRSYSEVVEKSESAGVTDPVLIKTPKEWQPISL
Ga0209006_1000017859F001399GGAGGMKLNDSITTYDIAEALQGETGKFEVTSPNGERYFVTCQPGHSIVSLEWAGSDPNQQPFLVRKVAQPVSLEGRKRSASAA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.