NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10001281

Scaffold Ga0209006_10001281


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10001281 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22795
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F008825Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_1000128122F008825GGAGMNCVELQQSLAEVEDGSTLEQSRHLQECAECAALLDELNLIVATATELQASDEPSPRVWNSIETALRQEGLIRPQRSADRHSVIPSFSARWGRARWLVPIAAMLLLAVGIYQRRESSINRNMQEMVVATPTFKTPTANPSGLNDDDLIQEVAANSPAMQSQYEENLRRVNESIRDAQGAVNENPDDQDASRALMDAYQQKSMLFEMAMEHPLQ
Ga0209006_100012819F000249GGAGGMKTSRTVLVFLLIVCTVSFAQTVAPAKDAQTLGTEDRMFFPKDTFWGWAQFDIAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGQLRRFMVFGAPTFLFGKTIPQTLYTWSPDAIGIEHSWGVGIFIAKGFEFRVTQHFLFDRLGARDTYLGVADLGNNGPWGRYTTLGVHKSFGTRRW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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