NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10022293

Scaffold Ga0209006_10022293


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10022293 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5741
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010046Metagenome / Metatranscriptome309Y
F058314Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_100222934F058314AGGAMGAWLLLGTDSLIACIAVGPIMARKMSLLVPFALLFGVGDGLGYLLGCALHWSYPDNLSFLAPTVVAVIGLYWIVVAIVSRRAAAAEENPRARWGVWVLPWLLSLDNITYGAVDGVSHGASIGLSAFEQFASSAIQAGVGLAIGIGIVYSIPALRRRMWLANATAGGAMLVAAGVLYLVG
Ga0209006_100222936F010046GAGGVAKIRVPRTGVTHTELAMVLSRRLGAEFQVDGDDRGEVVARRSPLSAAVVRITPVPGATVFRVRGVGVPVVSLGTARVVADALRRSPEFRSI
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