Basic Information | |
---|---|
Taxon OID | 3300027908 Open in IMG/M |
Scaffold ID | Ga0209006_10118827 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2335 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Algoma, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003851 | Metagenome / Metatranscriptome | 465 | Y |
F026325 | Metagenome / Metatranscriptome | 198 | Y |
F043015 | Metagenome / Metatranscriptome | 157 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209006_101188271 | F043015 | N/A | VIGMPLDVTFPRLKGVRWRYCTRWDEGPAAVLGMSLLRLGICRPNDWSGSAVDFVERGFKRFCSQNQVAAAKKVWVGDLRIMDSLFELTEQERNQVEAEKEGMTDHLYLISDYEAAASIPIGATLARLEADHHHLPAAFYAVLTTNLYKWMRVYDYLDAQEHAEMWMEDLS |
Ga0209006_101188272 | F003851 | GGA | MKRRRLATAAFRTIDKGAKRVVRALKDVRHGRVNANDPIMEQLRQCPEAFKVGEILGKAFDSLKYAQDGSELGDRYLPPSGVVIPPLV |
Ga0209006_101188273 | F026325 | GGTGG | MTDPTSDIKREVHQLVDLQIQTLRQPAGLNTSDLLDYRVRSKKLAALYQELDQLRRASFEGRLRRAS |
⦗Top⦘ |