NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10144510

Scaffold Ga0209006_10144510


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10144510 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2090
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071557Metagenome / Metatranscriptome122Y
F092592Metagenome107Y
F103659Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209006_101445101F071557GAGGVKKSTATIVDIAPPAQRDLGGVSVYLVEVRFRLDEHDDKTGIATHACFEELDKVWGVSQDTGKLWQQDWSKSVYPVENGVFVATLPDDPDWKIGKKYPVVLPNLTE
Ga0209006_101445102F092592GGAMAASKLDSLLNNLRTTLSDVDFRQGSEWDLPTLEHAKARLQSLARDALEAMNLIDELIEQHAED
Ga0209006_101445103F103659N/AMTKENQFVLACTLKTTEVSSGELSWKCCMSRFLDQIFSCRRDQYTGFPPHILLEKCPIPANAFDRDELGRAVWLWERRPRDLFFDGNVILWGRLSVFLVTIFFLMSFDIPGLLVAAALSFAVASLMLFNFYRREYWKRDYEASLFRLVRPYLR
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